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Felix's Projects

crispr-screen icon crispr-screen

Analysis of genome-wide CRISPR screen in primary human T cells

deep-learning-long-read-sequencing icon deep-learning-long-read-sequencing

variant calling followed by deep learning modeling (MLP, CNN, RNN, LSTM) of sequencing artifacts in Oxford Nanopore Technologies (ONT) WGS data

exome-sequencing icon exome-sequencing

SLURM bash pipeline/workflow for downloading and analyzing exome sequencing NGS data from the SRA database on HPC cluster

rna-seq icon rna-seq

Nextflow pipeline for Salmon quantification of HSC bulk RNA-seq data followed by R/Bioconductor analysis

scatac-seq icon scatac-seq

Signac R/Bioconductor scATAC-seq analysis comparing chromatin accessibility in hematopoietic stem cells (HSCs) of young vs aged mice

scrna-seq icon scrna-seq

Seurat R/Bioconductor scRNA-seq analysis of non-small-cell lung cancer (NSCLC) cells compared to normal lung cells

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