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100daysofcode-with-python-course

Course materials and handouts for #100DaysOfCode in Python course

abs_bioinfo

Simple Bioinformatics project looking for mutations in antibody libraries compared to the control PG9 VDJ sequence

abstar

VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

antibody

Genetics algorithms library for Python 3.x

asap-sml

autoblast

A set of Python and Bash scripts for automated BLAST analysis of the flanking sequences of circular RNAs.

bio_tools

Useful bioinformatic scripts

bioinformatics

biojs-io-clustal

Parses clustal files

cdr_bioinformatics

Trying to automatically pull out CDR loop sequences from a given antibody full sequence. Fairly rudimentary for now, but it works! Compares well to human selected CDR loop sequences.

cumab

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。英文版即伯克利“深度学习导论”教材。

deep-learning-21-examples

《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deeplearning

深度学习入门教程, 优秀文章, Deep Learning Tutorial

django-blast

NCBI-BLAST web service with python backend and HTML5 frontend.

dl_paper

This repo collects new Deep learning/Machine learning papers for protein research (especially antigen-antibody)

dynamics

Dynamics PyMOL Plugin

epitope

Ipython notebook that analyzes and predicts T cell epitopes from IEDB

epitopefinder

Python package for mapping epitopes to sequences

epitopepredict

Python package for epitope prediction methods

epitopescan

Scan sequences for epitopes

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

excelvba

A library of Excel VBA functions and routines I use in projects

experimentdb

The experimentDB is a web-based application for the storage, organization and communication of experimental data with a focus on molecular biology and biochemical data. This application also stores data regarding reagents, including antibodies, constructs and other biomolecules as well as tracks the distribution of reagents. There is also some preliminary interfaces to other web resources.

germab

Pipeline to analyse germline antibody sequences

intermine

A powerful open source data warehouse system

learnpython

以撸代码的形式学习Python

migmap

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

mrna-stability-prediction