Comments (9)
Hi @blubbundbla,
I have come across similar issue as you described. But I have usedcurl -C
option to rescue/continued a previous file transfer at the given offset. It worked for me.
Because the file itself is large, so you have to "-C" a couple time until it's done.
Note: please man curl
at your running environment to make sure the function has this feature.
Good luck!
Miao
from pyphlawd.
Hi,
thank you for the advice. I tried using the -c option, but the connection crashes after a few seconds. I literally would need to redo the command 200 times.
I will probably try the phlawd_db_maker. I just wanted to let you know that the download of the pre-made db is not really working.
Martha
from pyphlawd.
I’m sorry it’s not working on your side. Anyway, I’m trying all my experiences to help you.
Maybe it’s some regulation on your institution which not encourage people to download huge files.
Just make sure it’s “-C” (cap C), and It would took me 4-5 times in my case. Also I think “curl” also has a “--retry” feature.
Other way, maybe running a bash script, keep trying with combination of "-C" and “--retry” options until it's complete :)
I have tried “phlawd_db_maker”, see here.
from pyphlawd.
Hi folks,
Is it unable to continue the download?
from pyphlawd.
@blackrim It works on my side previously. Have not tired recently.
Miao
from pyphlawd.
@blackrim I tried it on different machines (all linux) and with different internet connections, as I thought it might be a problem on my site. It crashes approximately every 15sec. It continues the download with the -c function, but only 20x, after that, it stops, due to too many re-tries. When I restart it then it still continues, but it just makes the whole download unfeasible with 20GB.
from pyphlawd.
from pyphlawd.
Yes, I was able to construct one using phlawd_db_maker.
from pyphlawd.
from pyphlawd.
Related Issues (20)
- beautify html HOT 2
- add run html HOT 1
- About function HOT 2
- Location of logfile HOT 4
- FastTree NOT IN PATH (ఠ్ఠ ˓̭ ఠ్ఠ) HOT 1
- add outgroup HOT 1
- find_good_clusters_for_concat should have extra args HOT 2
- Traceback errors HOT 4
- enhancement: create conda package HOT 2
- Migrate to Python 3 HOT 2
- can't compile with cython HOT 5
- missing variable in find_good_clusters_for_concat.py HOT 1
- index of `change_id_to_name_fasta.py` out of range HOT 2
- Traceback error HOT 1
- PROBLEM REDOING ALIGNMENT HOT 1
- setup_clade_ap.py crashes
- Problem creating seq files when running setup_clade_ap.py. HOT 7
- Cannot download prebuilt databases
- sqlite3.OperationalError: no such column: custom_id
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pyphlawd.