ferninfm Goto Github PK

2019-snakemake-ucdavis

Intro to workflows for efficient automated data analysis, using snakemake.

bgmm

Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling [R package]

big-scape

Similarity networks of biosynthetic gene clusters

boss

A new algorithm for scaffolding

ffm_et_al_2017_molecol-

Scripts and additional material for the manuscript: ITS1 Metabarcoding highlights the low specificity of lichen mycobiomes at a local scale.

funannotate

Eukaryotic Genome Annotation Pipeline

funannotate-docker

Docker container for the funannotate genome annotation pipeline

funannotate-singularity

fungal_phylogenomics

Curso de filogenémica de hongos Madrid 17.5.2019

funguild

FUNGuild: parsing OTUs into functional guilds

hyperdiversity_project_webpage

kentutils

UCSC command line bioinformatic utilities

orthofinder

Phylogenetic orthology inference for comparative genomics

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

pyrenodesmia_phylogenetics

pyrenodesmia_phylogenomics

scripts

Assorted scripts useful for phylogenomics and population genomics pipelines

singularity

tagseq-qiime2-snakemake

Pipeline to run qiime2 with snakemake