actions

adcccelllineanalysis

ataccogaps

bioconda-recipes

Conda recipes for the bioconda channel.

cancerinsilico

An R package for running cell-based models

cancerinsilico-figures

cellsinspace

using spatial transcriptomics to inform a model of hypoxia in tumor cells.

cetuxadcc

clutrfree

C++ implementation of ClutrFree package

cogaps

Bayesian MCMC matrix factorization algorithm

cogaps-bioc

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/CoGAPS.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=CoGAPS.

cogaps-matlab

cogapscli

Standalone Command Line Version of CoGAPS

cogapsdevtools

Tools useful for developers of CoGAPS

cogapsdocker

Docker container for running cogaps

cogapsguide

cogapsseq

collaborativeanalysisguidelines

czi-hca-report

dominosignal

A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.

egfrfeedback

emt_ewald

Curated set of analysis scripts for single cell data from the Ewald Lab.

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

fertiglab.github.io

geneoscollaboration

Repository for R code for single cell sequencing analysis published in Yarchoan, M., Gane, E.J., Marron, T.U. et al. Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular carcinoma: a phase 1/2 trial. Nat Med (2024).

git-test

gpdriver_fertig

Python package for managing environments and notebooks on genepattern.org

gsreg

hca

hpv2013analysis

Scripts to replicate the analysis from Fertig et al. (2013) https://doi.org/10.1371/journal.pone.0078127