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bayseq

This package identifies differential expression in high-throughput 'count' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

circularcalendar

Large Scale Cicular Calendar with Phase of Moon and Sunset/Sunrise data

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

db4sci

Database for Science - Flask application for deploying containerized databases

easy_update

Update EasyBuild package configuration files for R and Python bundles

easybuild-easyblocks

Collection of easyblocks that implement support for building and installing software with EasyBuild.

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

easybuild-framework

EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.

filesystem-reporting-tools

Tools to help system administors manage very large file systems. pwalk

flair

Full-Length Alternative Isoform analysis of RNA

fstool

File System Meta Data Tools

fuzzdog

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

ls2

Life Sciences Software

ls2_easybuild_toolchain

Ubuntu container with easybuild, lmod, and the foss toolchain built.

ls2_lmod

Lmod install for LS2

minimal

Minimal is a Jekyll theme for GitHub Pages

msa

R package for multiple sequence alignment

parasail-python

Python bindings for the parasail C library.

pblat

parallelized blat with multi-threads support

procmon

Log all none root Linux kernel EXEC calls. pid, uid, host and cmdline are written with rsyslog in JSON format.

rcppplanc

rgraphviz

Devel repository for Rgraphviz

salesmkt

svclone

A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

telescope

Quantification of transposable element expression using RNA-seq

trigonometric_identities

Trigonometric Identities typeset with TeX

utils_cpp

wiki

SciWiki: Collective KnowledgeBase for Scientific Data and Use