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Florent Lassalle's Projects

agrogenom icon agrogenom

Python modules and scripts for the construction of Agrogenom database

cpaai_rhizobiaceae icon cpaai_rhizobiaceae

pipeline and reference protein sequence data for generating core-proteome alignment of Rhizobiaceae genomes

fwdtreesim icon fwdtreesim

Python module for simulation of forward evolution of a prokaryotic(-like) pangenome

genomescans icon genomescans

R module and script for the analysis of aligned biological sequences, mainly to perform genome-wide scan for the detection of hotspots of diversity, LD, etc.

microbiomes icon microbiomes

suite of scripts and modules for parsing output from metagenomic classification softwares, including Krona graphs

pantagruel icon pantagruel

a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome

tree2 icon tree2

Python modules for manipulating rooted phylogenetic trees

yemenpaper icon yemenpaper

Supporting data and scripts for paper on the Yemen cholera outbreak in 2018-2019

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