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Florian Zwagemaker photo

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followers: 10.0 following: 11.0 repos: 11.0 gists: 0.0

Name: Florian Zwagemaker

Type: User

Company: Center for Infectious Disease Control

Bio: I build software for analyzing viruses at the Dutch National Institute for Public Health and the Environment (RIVM) @RIVM-bioinformatics

Location: Utrecht, The Netherlands

Florian Zwagemaker's Projects

augur icon augur

Pipeline components for real-time phylodynamic analysis

pangolin icon pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

trueconsense icon trueconsense

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

viroconstrictor-tst icon viroconstrictor-tst

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

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