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auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

bedutils

Some Python utilities for working with BED format files.

fedora-rpms

Spec files and resources for building Fedora RPMS

fls-bioinformatics-core.github.io

galaxy-tools

FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

genomics

Scripts, utilities and programs for genomic bioinformatics.

gffutils

Python module and utility programs for working with GFF files

hts_solid_preprocessing

Archive of the SOLiD preprocessing scripts by Ariella Sasson & Todd Michael originally hosted at http://hts.rutgers.edu/filter

metagenomics

Scripts and utilities for running metagenomic analyses

nanodam_analysis-sge

R markdowns & scripts accompanying 'Tang, J et al., 2021, bioRxiv'.

pegs

PEGS: Peak-set Enrichment of Gene-Sets

proteomics-mascot-user-contact-verify

Determines a valid list of users from Matrix Science's Mascot user.xml file, using an LDAP server

proteomics-mascot_log_reader

Software for interpreting Matrix Science Mascot log's

proteomics-perl5-proteomics-lib

A library supporting Proteomic data manipulation

proteomics-python2.7-proteomics-lib

A library supporting Proteomic data manipulation

rnachipintegrator

RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

scrum_single_cell_bioinformatics_workshop

This is a workshop to show step-by-step workflow of Single cell RNA-seq analysis