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Hello 😁 👋

Hello there, my name is Felipe Almeida, a brazilian scientist, bioinformatician, pipeline developer and problem solver. My main interests are: Bioinformatics, genomic surveillance, precision medicine, and microbial genomics. You can also find me on twitter @fmarquesalmeida, stackoverflow and linkedin.

Academic info

I'm a PhD student at the University of Brasilia, at the CompGen (Computational Genomics) laboratory with academic guidance from PhD. Prof. Georgios J. Pappas Jr.

Some of my favourite tools:

Nextflow Python R bash

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Felipe Github Stats

Felipe Marques de Almeida's Projects

bacannot icon bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

easy_circos icon easy_circos

easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.

genomegtftools icon genomegtftools

convert various features into a GFF-like file for use in genome browsers

gff-toolbox icon gff-toolbox

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mpgap icon mpgap

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

my_gifs icon my_gifs

A repo to make my gifs acessible everywhere

ngs-preprocess icon ngs-preprocess

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

plot_nucmer icon plot_nucmer

A simple script to run an alignment with nucmer and visualise its results.

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