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👋 Hi there

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Biological engineer-turned computational biologist researching microbial community metabolism in Kiran Patil's group.

  • ☄️ Developing metagenomics + genome-scale metabolic modeling approaches for microbiome research
  • ⚙️ In descending order of preference, I enjoy coding in bash, R, python, and MATLAB
  • 📦 Writing workflows in Snakemake and deploying them on high performance computing clusters
  • 👽 PhD student in BioSci @ the MRC Toxicology Unit, University of Cambridge

Francisco's GitHub stats

Francisco Zorrilla's Projects

chalmers-igem2018 icon chalmers-igem2018

COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.

embomicrocom icon embomicrocom

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities

lichens icon lichens

Metabolic modeling of lichen metagenomes

melanie_screen_gems icon melanie_screen_gems

This repo contains inputs, outputs, and step-by-step details regarding how genome scale metabolic models were reconstructed for strains used in Melanie's screen.

metagem icon metagem

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

symbnet icon symbnet

Teaching materials for SymbNET course: from MAGs to GEMs

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