Name: Francisco Zorrilla
Type: User
Company: MRC Toxicology, University of Cambridge
Bio: PhD Student in the Patil Lab. Interested in metagenomics, metabolic modeling of microbial communities, and machine learning
Twitter: metagenomez
Location: Cambridge, UK
Blog: https://franciscozorrilla.github.io/
Francisco Zorrilla's Projects
Conda recipes for the bioconda channel.
COM-dFBA is a MATLAB based COMmunity Dynamic Flux Balance Analysis framework developed by the Chalmers iGEM 2018 team. For this work, we were nominated for best modeling at the Giant Jamboree.
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities
Metabolic modeling of lichen metagenomes
This repo contains inputs, outputs, and step-by-step details regarding how genome scale metabolic models were reconstructed for strains used in Melanie's screen.
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Repo housing :gem: metaGEM paper results
Teaching materials for SymbNET course: from MAGs to GEMs
University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis
metaGEM applied to unseenbio WGS sequencing samples