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3d-rat-brain

3D in-browser visualisation of the 2015 rat brain atlas by Kjonigsen, Papp et al.

abr_thresholder

Automated and objective determination of hearing thresholds from averaged Auditory Brainstem Response (ABR) raw data

allenbrain

:mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.

allenbrainatlas-annotationdownloader

This script requests the structure boundary data of the P56 Mouse Coronal from http://atlas.brain-map.org/

allenmousebrainimageloader

Two small tools to render the annotation and images of the Allen Mouse Brain Atlas

ara_tools

Analysis of mouse brain STP data with respect to the Allen Reference Atlas

arduinofearcond

Fear conditioning signal generator

automatic-abr-threshold-detection

canlab_mkda_metaanalysis

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

dftreg

python module for image sequence registration

ee-motion-activity

Environmental enrichment decreases circadian motion activity and increases crepuscular dusk activity as assessed by open cage mouse behavior

flexdrive

Compact hyperdrive for up to 16 independently movable electrodes

fmanno

imagemagick

ImageMagick

klusta

Automatic spike sorting up to 64 channels

metahearingloss

micaopen

miscellaneous

bunch of different scripts

mouse_transcriptome

Matlab code for building an informatics portal to explore the transcriptome architecture of Allen Mouse Brain Atlas

mousebrainatlas

A system for building mouse brain atlas from histology images

mri_analytic_tools

neurofittermoea

a plugin for neurofitter 0.9.3 that performs multi-objective error optimization using genetic algorithms (Evolving Objects)

operanter

Operant conditioning with arduino

paq2py

Read paq file (from PackIO) into python

parametricmultisubjectfmri

Scripts for SPM, FSL and AFNI used for investigating the validity of parametric statistics for multi-subject fMRI.

personal_data_science_projects

plugin-gui

Open Ephys GUI with plugin architecture

ppi

PPI

pybehaviour

Software and hardware for control of operant conditioning behavioural experiments