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Francoise_tu's Projects

cromwell-kccg-mutect2-chip icon cromwell-kccg-mutect2-chip

Detect clonal haematopoiesis of indeterminate potential (CHIP) mutations using the GATK4 Mutect2 somatic variant calling pipeline and the Cromwell workflow engine.

gatk icon gatk

Official code repository for GATK versions 4 and up

iliad icon iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

movieist icon movieist

REST API powered by Spring Boot written for a freeCodeCamp course

prs-tutorial icon prs-tutorial

A tutorial on how to run basic polygenic risk score analysis

ukb_rap icon ukb_rap

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

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