Error while executing download data script

[frankkramer-lab]

Error while executing download data script

[saahiluppal]

Got it, Downloading dataset locally.

Thank you for this awesome project and thank you for your help

[muellerdo]

Hey @saahiluppal,

can you verify that the dataset was correctly downloaded?
I would take a guess that there was some downloading issue resulting in corrupted files.

The download links as well as the script still works on my end.

Cheers,
Dominik

[muellerdo]

Please also verify that the python script has enough permissions to create and delete files/directories in your current working directory.

[saahiluppal]

Here is the gist from my colab run.
As you can see, the data doesn't even start to download and i guess that's why zip says it is not a valid file.

[muellerdo]

Mhm, interesting.

If you open up the downloaded file with a random text editor or via cat/vim/nano, it shows the request response.
-> Google Colab is IP blocked from automatic downloading from Zenodo.

Zenodo probably wants Google Colab users to use their API to download files in large quantity instead of just downloading it with the frontend link (as I did).
https://developers.zenodo.org/#rest-api

You can either download the dataset locally on your computer (<2GB) / run the script locally and then upload it to your Gdrive,
or you can adjust the script by using your personal token for downloading from Zenodo.

Here is the Zenodo repository of the dataset: https://zenodo.org/record/3757476#.YMDcJkxCSHs

Hope that I was able to help.

Cheers,
Dominik