Huang (Frederick) Lin's Projects
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
Archive: Data, scripts, and outputs for the paper "Multi-group Analysis of Compositions of Microbiomes with Covariate Adjustments and Repeated Measures". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
The archive for data, scripts, and outputs for the paper "Bacterial and Immunological Mediators linking Caregiving with Metabolic Syndrome".
Scripts and outputs for the manuscript "The effect of sexual behavior on HIV-1 seroconversion is mediated by the gut microbiome and proinflammatory cytokines"
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
In response to reviewer #1
The archive for data, scripts, and outputs for the paper "Exposure to antibacterial chemicals is associated with altered composition of oral bacteria; the RHINESSA study, Bergen, Norway".
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.