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alpha-centauri

A python package from Pacific Biosciences to analyze centromeric sequences

alu_proj

annot_utils

scripts processing annotation data from UCSC

aws_simple_batch

Example script for Amazon AWS Batch

branchpoint_db

Database for predicted branch points

bwa_alignment_eval

evaluation program for bwa alignment at GCP

cancer_gene_db

Database for known cancer genes

ccxt_test

centr_utils

utilities for centromere analysis

chimera_utils

programs for processing chimeric reads generated at a STAR alignment step

complete-striped-smith-waterman-library

dnv_singleton_collector

Script for collecting DNV singleton from bam files

docker_misc

resources for docker

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

ebcall

an empirical Bayesian framework for mutation detection from cancer genome sequencing data

ebcall2_test

fastqp

Simple FASTQ quality assessment using Python

friend1ws.github.io

My website

fusion_db

Database for fusion gene

fusion_utils

utility for comparing fusion results

genomon_rna_gce

Perform Genomon RNA pipeline using Google Compute Engine

genomoncomplexmutation

Detecting complex mutations

genomonsplicingmutation

GenomonSplicingMutation

ggseqlogo

A lightweight package for generating sequence logos based on ggplot2

gitbook

Repository for GitBook

github_action_test

hap_utils

Utilities for haplotype analysis

hlf-course-domain-model

Part of the HL Fabric course (http://ACloudFan.com) Contains the code discussed in section on Business Domain Model Development

homocomp

homopolymer compression program by Rust

hotsub

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources