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Evan Fu's Projects

deepsnvminer icon deepsnvminer

A sequence analysis tool to detect emergent, rare mutations in sub-sets of cell populations

dna icon dna

DNA_mutation_analysis_Fastqc_trim_bwa_gatk4_mutect2_HC_freebayes_annovar_pipeline

dna-seq-varlociraptor icon dna-seq-varlociraptor

Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor

gencore icon gencore

Generate consensus reads to reduce sequencing noises and remove duplications

optitype icon optitype

Precision HLA typing from next-generation sequencing data

snakepipes icon snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

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