fzhangcode Goto Github PK

bioinformatics-workshop

I helped to develop a workshop about RNA-Seq data analysis on Linux cluster environment, 2016.

bulk_rna-seq_pipeline

Kallisto, gene quantification, QC, PCA and related

chuangqi

computational_lab_manual

We wrote a getting-started file for reproducible research in computational science (computational biology).

fzhang

Personal website of Fan Zhang

global_optimization

:butterfly: Zhang, et al, 2019. A global optimization algorithm for a sparse mixed-membership matrix factorization problem for molecular subtypes classification.

inflamedtissue_covid19_reference

rare_variant_detection

This work is published in the journal of Bioinformatics, 2015. It is a novel Bayesian model for rare variant detection in NGS data.

review-paper-for-variant-detection

I am working on a review paper.

rvd

:whale: He, Y., Zhang, F., and Flaherty, P, Bioinformatics, 2015. The source code and command line interface for rare variant detection in NGS data is downloaded here.

rvd2-variational

:dolphin: Fan Zhang, et al, 2017. BMC Bioinformatics. A variational Bayesian model to identify rare variants in heterogeneous NGS clinical samples.

singlecell-pipeline

statscompreadinglist

verifybamid