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gatech-genemark's Projects

genemark-ep-plus icon genemark-ep-plus

GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins

genemark-etp icon genemark-etp

GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

mgcod icon mgcod

Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions in prokaryotic sequences

prosplign-intron-scorer icon prosplign-intron-scorer

ProSplign intron scorer parses introns from ProSplign's alignment output and scores them based on local alignment quality.

prothint icon prothint

Protein hint generation pipeline for gene finding in eukaryotic genomes

spaln-boundary-scorer icon spaln-boundary-scorer

Spaln boundary scorer parses introns, starts, stops and exons from Spaln's alignment output and scores them based on local alignment quality

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