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Guillaume Cerutti's Projects

artificial_tissue icon artificial_tissue

A set of tools to generate virtual tissues with various possible computational representations

astec icon astec

Adaptative Segmentation and Tracking of Embryonic Cells (developer version, python code only)

card_suits icon card_suits

A Python script to generate a full deck of playing cards with 8 suits

cellcomplex icon cellcomplex

OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.

cgal_meshing icon cgal_meshing

Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.

draco_stem icon draco_stem

OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)

openalea icon openalea

Official repository for OpenAlea and OpenAleaLab. Other repos in the openalea organization contain things like the website, documentation, projects, etc.

timagetk icon timagetk

3D and 2D Image processing algorithms in Python for tissues

tissue_analysis icon tissue_analysis

An OpenAlea library providing image analysis tools to extract quantitative information from 3D segmented tissue images

tissue_nukem_3d icon tissue_nukem_3d

An OpenAlea library for the detection and quantitative data extraction from microscopy images of cell nuclei

villagers_tree icon villagers_tree

A python package to generate a tree visualization of Villagers cards.

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