geneticresources Goto Github PK

gwas_grs_pipeline

This pipeline is used to calculated genetic risk scores from imputed data (MACH format). Best used post-imputation with the Michigan Imputation Server.

gwas_pipeline

Module and pipeline files for genome-wide association analysis

gwas_scripts

Codebook from my GWAS cookbook

h2-gre

Scripts for GRE

h3agwas

GWAS Pipeline for H3Africa

haplor

haploR: utilities for mining Haploreg and other similar web-based tools

height-ec-depict

hess

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

hops

Allows to compute the HOrizontal Pleiotropy Score (HOPS) from summary statistics.

ibis

Algorithm for rapid, phase-free detection of long identical by descent segments

impute-me

This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.

imputeinversion

Scripts to impute inversion regions of interest

krumlovsinglecelltx2018

single cell transcriptome workshop in Krumlov, Jan 2018

labs

Rmd source files for the HarvardX series PH525x

ldpred

ldpred-funct

Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337

ldsc

LD Score Regression (LDSC)

learning-probabilistic-graphical-models-in-r

Learning Probabilistic Graphical Models in R

leetcode

:pencil: Python / C++ 11 Solutions of All LeetCode Questions

libplinkio

A small C and Python library for reading PLINK genotype files.

linearalgebra

Linear Algebra examples in R

linsight

lmmlite

Simple port of pylmm: linear mixed models for GWAS

locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

locusexplorer

An interactive graphical illustration of genetic associations and their biological context

locuszoom-pythonr

Create regional association plots from GWAS or meta-analysis

mast

Tools and methods for analysis of single cell assay data in R

mastering-parallel-programming-with-r

Code file for Mastering Parallel Programming with R by Packt Publishing

mendelianrandomization

:exclamation: This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package

metaboprep

a pipeline of metabolomics data processing and quality control