Cannot install NORMT3

[ruhollah2]

Cannot install NORMT3

[xiasijian]

[chrisamiller]

It appears that NORMT3 was removed from CRAM, but I was able to install it on MacOSX by grabbing the latest package from the archives: https://cran.r-project.org/src/contrib/Archive/NORMT3/

$ wget https://cran.r-project.org/src/contrib/Archive/NORMT3/NORMT3_1.0.4.tar.gz
$ R CMD install NORMT3_1.0.4.tar.gz
$ R --silent
> library(NORMT3)
NORMT3: Evaluates erf, erfc, Faddeeva functions and Gaussian/T sum densities
Copyright: Guy Nason 2005-2022
> sessionInfo()
R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur/Monterey 10.16

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] NORMT3_1.0.4

loaded via a namespace (and not attached):
[1] compiler_4.2.0

Does this solution work for you?

[LorenzoBioinfo]

I tried downloading NORMT3 from https://cran.r-project.org/src/contrib/Archive/NORMT3/ but I got the same error of ruhollah2.

[chrisamiller]

I am seeing the same issue now on R version 4.3 and MacOSX 12.6. It's a fairly deep rabbit hole involving clang/gfortran versions that I don't have time to go down at the moment (but will check back on in the future).

In the meantime, I know that this docker image contains a working version of sciclone. You could give it a try until we're able to find a workaround:
https://hub.docker.com/r/seqfu/sciclone