genomic-medicine-sweden Goto Github PK
Name: Genomic Medicine Sweden
Type: Organization
Location: Sweden
Name: Genomic Medicine Sweden
Type: Organization
Location: Sweden
Config files used to define parameters specific to compute environments at different Institutions
Dockerized version of the sc2reporter program.
A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).
utility for uploading sequence and metadata to the NGP
A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
GMS Best practises for long read analysis
Placeholder for solid tumor bioinformatic workflow
GMS Metagenomics post-classification
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Assembly and binning of metagenomes
nf-core/taxprofiler post-processing; verification of classification results; consensus maps
Visualisation of metagenomic analysis results
This repo shares data between sites for the development of GMS-micro solutions.
A repo to collect information about all different projects we have in GMS-Micro
Repository to host tool-specific module files for the Nextflow DSL2 community!
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
A long-read (PacBio and ONT) analysis pipeline written in Nextflow
Shared nextflow modules and assets
Small scripts and other similar NGP solutions of sensitive nature
NGPIris 👁 (intelligence and repository interface software) is a light-weight tool for interacting with a Boto3 backed Hitachi Content Platform
Pharmacogenomics pipeline
Call and score variants from WGS/WES of rare disease patients.
A web based analys tool for Sars-CoV-2 data
TAXnomic Profile Aggregation and STAndardisation
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.