Giter Site home page Giter Site logo

Comments (4)

liliay avatar liliay commented on August 11, 2024 1

Hi there,

It ended up working for me : I double checked that my db path was right. In fact, my database was in ./db/db/ so I moved it to ./db. I suggest that you check that your database is in the indicated path, it worked for me !

Let me know if the error persists !

Lilia

from nanoclust.

larssnip avatar larssnip commented on August 11, 2024

It looks like it does not find the 16S database. How exactly did you specify --db and --tax in your command line?

I also have problems at this step, but not the same one. It looks like the BLAST-database I downloaded and untarred (according to the suggestions here) is corrupt in some way. I tried to use a straightforward blastn using the same database, and it crashes with the same error message as Nanoclust. Is there a link to the raw fasta files, such that I can build the database myself?

from nanoclust.

josiah-liew avatar josiah-liew commented on August 11, 2024

Hi. Has there been any luck with this issue so far? I'm also encountering the same problems.

from nanoclust.

josiah-liew avatar josiah-liew commented on August 11, 2024

Hi! Thank you for the suggestion and glad to hear it works. I managed to get it to work as well - I moved the db to a separate location and provided the absolute path. Thanks again!

from nanoclust.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.