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awesome

A curated list of awesome lists

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awesomeplotgenerator

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_scripts

Bioinformatics scripts

computer-science-and-engineering

:mortar_board: Path to a free self-taught graduation in Computer Science

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

datasciencecoursera

Repository with my R scripts for the Data Science Specialization on Coursera (Johns Hopkins)

datasciencespcoursenotes

Compiled Notes for all 9 courses in the Coursera Data Science Specialization

datasharing

The Leek group guide to data sharing

deepmp

DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data

deidentificator

Deidentificator is a tool that extracts the genotype(s) from the VCF files and implants clinically associated variants inot the list of transmitted variants. Identification strips the clinically associated variants previously implanted and imports back the genotype(s).

find_repeatfree_region

flair

Full-Length Alternative Isoform analysis of RNA

geoanalysis

gerikson

gerikson.github.io

misc

Misc. utilities

myvariant.info

myvariant.info

nanoporereads_datatransfer

A pipeline to transfer the Nanopore reads to end users

notes

Lab notes and software usage guides

oneliners

Useful bash one-liners for bioinformatics.

palomar

Palomar

pandasvcf

VCF parser using the Python pandas library

pore-c-snakemake

Fork of Pore-C-Snakemake for running on the MPI cluster

primer_tool

This is a simple program that reads in a file with multiple sequences in fasta format and then finds the primers that are required to join these sequences together using a yeast assembly protocol. Dependency - primer3 (https://github.com/libnano/primer3-py)

privacy-tool

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pythonscripts

salkigctools