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dcapeptides

Extension of Direct Coupling Analysis to consider multiple ligands

epic

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

epic-atac

epic-atac_manuscript

Code used for the analyses performed in the EPIC-ATAC manuscript

exercises_intro_bioinfo_clinique

ggseqlogo

Publication-quality sequence logos in R

metacellanalysistoolkit

Toolkit for metacell analysis

metacellanalysistutorial

Tutorial on construction and analysis of metacells

mhcpext

Identification of N- and C-terminal extensions in HLA-I ligands

mixmhc2pred

HLA-II ligand predictor.

mixmhcp

Tool for motif deconvolution in large HLA-I ligand datasets

mixmhcpred

HLA-I ligand predictor

mixtcrpred

Predictor of TCR-epitope interactions

modec

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

phosmhcpred

Predictor of Phosphorylated HLA-I ligands

pldpred

Predictions of peptide length distribution for HLA-I molecules

prime

PRedictor of IMmunogenic Epitopes

sib_workshop

supercell

Coarse-graining of large single-cell RNA-seq data into metacells

superspot