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ablateit-docker

ahocorasick

Fast string searching in various languages (Clojure, C++)

ahocorasick.jl

Julia implementation of the Aho-Corasick algorithm for fast string searching.

alpaca-lora

Instruct-tune LLaMA on consumer hardware

biomart-client

Clojure library for querying BioMart unRESTful web services

biotk

Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries

ci-workshop

R/Bioconductor cancer informatics workshop at Rajiv Gandhi Centre in January 2013

cruzdb

python access to UCSC genomes database

dataframes.jl

library for working with tabular data in Julia

docker

factor-graph

Belief propagation over factor graphs in directed & undirected PGMs

finetune-study

Comprehensive analysis of difference in performance of QLora, Lora, and Full Finetunes.

fun

Collection of small programs for fun & learning

genome_runner

genomicregions.jl

Julia package for handling sets of genomic regions, with in-memory and on-disk indexing capabilities.

gograph

.NET library for finding shortest paths in Gene Ontology.

gpt4all

gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue

gseconvert

Constructs and preprocesses a gene expression matrix from raw GSEs for use in meta-analyses

h5df

Library and CLI for storing numeric data frames in HDF5

june

Local voice chatbot for engaging conversations, powered by Ollama, Hugging Face Transformers, and Coqui TTS Toolkit

lein-chronic

Schedule leiningen tasks for timed execution.

lein-condor

Parallelize Clojure on a Condor cluster.

litberator

Retrieve PDFs from a PubMed query string

lobstr-code

lobSTR: a short tandem repeat profiler for next generation sequencing data

mdbread

Cross-platform Python reader for MS Access files

mrat

Methylated region analysis tool

ndbapi

Python API for the Nucleic Acid Database (http://ndbserver.rutgers.edu/)

nixpkgs

Nix Packages collection

nlptk

NLP utilities (NER, parsers, corpus readers), wrapped in Clojure.

pcor

Parallel computation of all-vs-all Pearson correlations