Comments (1)
Fixed in #47
from gcp-variant-transforms.
Related Issues (20)
- Add a flag to specify the "pipeline mode" (SMALL, MEDIUM, or LARGE) HOT 7
- Add a flag to preserve the call.name field HOT 9
- Add a flag to omit homozygous reference calls on vcf_to_bq import
- Document how to use Dataflow Flexible Resource Scheduling to save on Cloud cost
- Update the VEP release used for annotations HOT 1
- Fix deploy_and_run_tests.sh to be locally runnable.
- Enabling --save_main_session pipeline option in our pipelines. HOT 1
- Add an option to disable sharding
- off by 1 error? HOT 3
- move_hom_ref_calls python error HOT 1
- Network parameter not being read HOT 27
- VCF to BQ Timeout Issue HOT 4
- The MISSING_GENOTYPE_VALUE value of -1 can conflict with genotype values that are in a VCF (scalar vs. list)
- pyYAML 6.0 incompatability HOT 1
- unable to pull from pypi.org when running under VPC SC
- flatten null repeated column
- AnnotateShards not producing **vep_output.vcf HOT 3
- VCF to BQ via docker keeps failing HOT 1
- support for newer version than python 3.7
- subnetwork flag to use network/subnet outside the project where dataflow runs in
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from gcp-variant-transforms.