Comments (1)
All the required changes to fix integration tests, add some minimal verifications to them, and run them automatically on every commit are done. Once the documentation changes of PR #97 is merged, this issue will be closed. The remaining nice to have but not critical enhancements are tracked in Issue #98.
from gcp-variant-transforms.
Related Issues (20)
- Add a flag to specify the "pipeline mode" (SMALL, MEDIUM, or LARGE) HOT 7
- Add a flag to preserve the call.name field HOT 9
- Add a flag to omit homozygous reference calls on vcf_to_bq import
- Document how to use Dataflow Flexible Resource Scheduling to save on Cloud cost
- Update the VEP release used for annotations HOT 1
- Fix deploy_and_run_tests.sh to be locally runnable.
- Enabling --save_main_session pipeline option in our pipelines. HOT 1
- Add an option to disable sharding
- off by 1 error? HOT 3
- move_hom_ref_calls python error HOT 1
- Network parameter not being read HOT 27
- VCF to BQ Timeout Issue HOT 4
- The MISSING_GENOTYPE_VALUE value of -1 can conflict with genotype values that are in a VCF (scalar vs. list)
- pyYAML 6.0 incompatability HOT 1
- unable to pull from pypi.org when running under VPC SC
- flatten null repeated column
- AnnotateShards not producing **vep_output.vcf HOT 3
- VCF to BQ via docker keeps failing HOT 1
- support for newer version than python 3.7
- subnetwork flag to use network/subnet outside the project where dataflow runs in
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gcp-variant-transforms.