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Chris Grassa's Projects

backtranslate icon backtranslate

given an amino acid alignment and the coding sequences for the proteins, back-translates the amino acids to codons

biopython icon biopython

Nick Matzke's git mirror of the Biopython CVS repository, for GSoC 2009 project: BioGeography module for biopython

cbdrx icon cbdrx

A collection of Bash and Perl scripts documenting the assembly of the CBDRx genome.

gbif- icon gbif-

analyze and manipulate GBIF data

hi-c-scaffold icon hi-c-scaffold

SALSA: A tool to scaffold long read assemblies with Hi-C data

miniasm icon miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

qpbrute icon qpbrute

Heuristic search algorithm for fitting qpGraph models

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