Comments (3)
pangxueyu233
commented on May 19, 2024
And I tried to change the code like this:
fragments <- fragments[mcols(fragments)[,"RG"] %in% rownames(tssSingles)[tssSingles$cellCall==1]]
And it works,
I know this step wants to filter cells but I'm not sure whether it's right by my fixing.
from 10x-scatac-2019.
pangxueyu233
commented on May 19, 2024
One more suggestion, could you upgrade the codes? Because some parts was used Seurat V2.3, it's not friendly to further people using seurat V3.
Thanks
from 10x-scatac-2019.
jeffmgranja
commented on May 19, 2024
looks like a variable got deleted
by = "RG"
i normally write it as mcols(fragments)$RG but i corrected it everywhere to be more flexible
from 10x-scatac-2019.
Related Issues (16)
- Request the human-mouse hybrid analysis gene.ranges and tss.ranges settings
- Analyze the umap trajectory
- Plot CNA HOT 1
- Using this repository for CNV Analysis
- Cannot find original bam file on NCBI
- data on NCBI not downloadable
- 05_Cluster_Unique_Peaks_v2.R - changes needed for identifying unique gene activities
- Unable to fine the dataset of PICS_GWAS_SNPS.gr.rds
- Ask for Cicero PBMC dataset
- would you consider providing an example of analysis using 10x's output HOT 1
- .. HOT 1
- 02 HOT 8
- TF footprinting script
- data availability HOT 1
- NO fragments.tsv.gz OF Hematopoiesis cells HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from 10x-scatac-2019.