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Grice Lab's Projects

alignerboost icon alignerboost

AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework

dfustrainswgs icon dfustrainswgs

This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)

eagenomeassembly icon eagenomeassembly

Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)

hmmufotu icon hmmufotu

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

msgseqtk icon msgseqtk

A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm

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