gsneha26 Goto Github PK
Name: Sneha D. Goenka
Type: User
Company: Stanford University School of Medicine
Bio: Postdoctoral Researcher
Twitter: gsneha261
Location: Stanford, CA
Name: Sneha D. Goenka
Type: User
Company: Stanford University School of Medicine
Bio: Postdoctoral Researcher
Twitter: gsneha261
Location: Stanford, CA
Official home of genome aligner based upon notion of Cactus graphs
Co-processor for whole genome alignment
SDK for GPU accelerated genome assembly and analysis
Program for aligning DNA sequences, a pairwise aligner.
P.E.P.P.E.R.: Program for Evaluating Patterns in Pileups of Erroneous Reads
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
SIMD partial order alignment tool/library
Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
Tree edit distance using the Zhang Shasha algorithm
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