Comments (7)
gtonkinhill
commented on June 16, 2024
I think this should be possible using Rscript. Would this suffice? It would still require installing fastbaps using R/conda.
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gtonkinhill
commented on June 16, 2024
I have added a command line script in 37435c2. It's located in the fastbaps/inst subdirectory. I will look at updating the conda recipe to put this in the users path. If I get a chance I'll see if I can get it setup in a docker instance as well.
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gtonkinhill
commented on June 16, 2024
This is now included in the bioconda recipe.
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tseemann
commented on June 16, 2024
@gtonkinhill thanks so much!
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johnlees
commented on June 16, 2024
I think optparse might need to be added to the dependency lists for this
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johnlees
commented on June 16, 2024
Also v. minor issue if reopening this, phylogeny is misspelled as 'phylogney' in the options
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gtonkinhill
commented on June 16, 2024
I'd forgotten about this but it should be fixed in the latest release.
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Related Issues (20)
- Calculating assignment probabilities
- shared object ‘fastbaps.dylib’ not found HOT 6
- Problem in installing fastbaps (Ubuntu 20.0) HOT 1
- segfault from C stack overflow HOT 1
- Index out of bounds HOT 7
- Information on Symmetric Prior HOT 1
- Different results with "optimise.symmetric" and "optimised.symmetric" HOT 3
- Hashes in filenames cause name match issues HOT 2
- Inconsistencies with phylogeny HOT 2
- Errors with small alignments as input HOT 4
- conda install stuck on solving environment in WSL2 HOT 4
- Index out of bounds HOT 2
- how to force fastbaps to be consistent by using the best_baps_partition function with multi_res_baps HOT 2
- can fastbaps run in parallel? HOT 1
- Level 1 and 2 cluster HOT 2
- Instalation failling on Windows HOT 3
- Issue loading data HOT 4
- crash with small data HOT 1
- Issues installing - compilation failure HOT 6
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