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Gina Turco 's Projects

80_genomes icon 80_genomes

code for analyzing loss and gain of a gene among many genomes

bcbb icon bcbb

Useful bioinformatics code, primarily in Python and R

bs_seq_analysis icon bs_seq_analysis

bisulfite sequencing calling methylation, DMRs and overlap with genes

find_cns icon find_cns

find conserved non-coding sequences (CNS)

gh-usernames icon gh-usernames

repository to illustrate forking and to collect github usernames

goatools icon goatools

Python scripts to find enrichment of GO terms

handson-ml icon handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

htseq_tools icon htseq_tools

cool bioinformatic tools make using the htseq package

knockouts icon knockouts

code for working with RNAI, TALLENS, CRISPER

methpipe icon methpipe

A pipeline for analyzing DNA methylation data from bisulfite sequencing.

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