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Guilherme Sena's Projects

abismal_benchmark icon abismal_benchmark

A repository to reproduce the comparisons performed in the paper "Fast and memory-efficient mapping of short bisulfite sequencing reads using a two-letter alphabet"

compbio-algos-in-cpp icon compbio-algos-in-cpp

Implementation of some algorithms we often see in some computational biology fields: t-SNE, Gaussian Mixture Models, etc.

docks_dot_cpp icon docks_dot_cpp

A C++ implementation of the DOCKS algorithm from Orenstein et al 2016

horvath_methylation_age icon horvath_methylation_age

A repository to try to reproduce the results of Horvath's epigenetic clock study from methylation array data.

lindstrom_et_al_h17w_data_analysis icon lindstrom_et_al_h17w_data_analysis

Data analysis for the paper "Progressive recruitment of mesenchymal progenitors reveals a time-dependent process of cell fate acquisition in mouse and human nephrogenesis"

methylation-ui icon methylation-ui

A web interface to fetch DNA methylation datasets from SRA and facilitate obtaining high-quality bisulfite sequencing data

min-cost-solver icon min-cost-solver

given an array of costs and w, find the subset with minimum cost constrained that 2 indexed positions must be at most w bases apart

screamr icon screamr

An R package for downstream analysis of scRNA-Seq data

seqdiff icon seqdiff

a program to estimate the difference between data from reads in a SAM file to its reference genome

writeups icon writeups

An archive of all my writeups on different RNA-Seq related subjects.

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