gunjan-dixit Goto Github PK

as_apa_jove

atac-seq

atacseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

bioinf545

ATAC-seq lab for BIOINF545

bis2019_sc

bus_notebooks_r

R vignettes for processing BUS format single-cell RNA-seq files

chipseqtutorial

Tutorial on how to use MACS2 to explore ChIP-Seq data.

cnn-text-classification-tf

Convolutional Neural Network for Text Classification in Tensorflow

conquer_comparison

Code for evaluation of differential expression methods in single-cell RNA-seq data

cpc

Working copy of Coding Potential Calculator. Will serve as an archive.

dea.r

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom

deeplearning-biology

A list of deep learning implementations in biology

deeplearningimplementations

Implementation of some deep learning models

deepnuc

Convolutional Neural Networks (CNN) for nucleotide sequences implemented in Tensorflow

diff_splice_paper

Code for differential splicing comparison paper (Soneson, Matthes, et al.)

docker-cheat-sheet

Docker Cheat Sheet

dragonn

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

factornet

A deep learning package for predicting TF binding

fiddle

Flexible Integration of Data with Deep LEarning

genome

Python library and scripts for retrieval and storage of genomics data in HDF5 format

in-depth-ngs-data-analysis-course

leopard

msmbuilder

Statistical models for biomolecular dynamics

oshlack.github.io

Oshlack Lab website

r-docker-tutorial

A docker tutorial for reproducible research

r4ds

R for data science

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scatac-benchmarking

Benchmarking computational single cell ATAC-seq methods

tensorflow-without-a-phd

A crash course in six episodes for software developers who want to become machine learning practitioners.