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ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
DeepGRP is a package used to predict genomic repetitive elements.
Extensive de-novo TE Annotator
Official code repository for GATK versions 4 and up
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
software tools for haplotype assembly from sequence data
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
Specifications of SAM/BAM and related high-throughput sequencing file formats
Python utility libraries on genome assembly, annotation and comparative genomics
Visualization and analysis software for Hi-C data -
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
Loop extrusion as a mechanism for DNA Double-Strand Breaks repair foci formation
A Multi-channel Optical Map Scaffolder
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
PASA software
Plann: a command-line application for annotating plastome sequences
Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
calling SVs from Blasr contig level alignments
Identify and find telomeres, or telomeric repeats in a genome.
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.