guyleonard Goto Github PK

2013-11-14-exeter

Website and course materials for the Software Carpentry boot camp held at Exeter on the 14 November 2013

assembly-stats

Assembly statistic visualisation

beer_labels

a bunch of designs of labels for my homebrew beers

bio-ansible

Proof of concept to use ansible + Lmod to deploy a bioinformatics server

bioconda-recipes

Conda recipes for the bioconda channel.

blastocladiella

The genome of Blastocladiella emersonii

busco_hmms_for_anvio

Making BUSCO HMMs useable in Anvi'o.

easyrax

The script aims to make execution of RAxML a little easier by use of simple command-line menus and some user input.

electric_brewery

evomics_2017

Creating the AMI for the evomics.org Workshops

evomics_2018

Creating the VM setup for the evomics.org Workshop on Genomics

evomics_2019

Creating the Virtual Machine (AMI) for the evomics.org Workshops

fdfblast

fin-phd

Various scripts (mainly perl) for PhD stuff

gene_prediction_pipeline

Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS

genome_crossovers

Which genomes are where in the big DBs?

genomics_adventure

Workshop on Genomics - Genomics Adventure

get_ensembl_genomes

A quick and easy way to download the genomes/predicted proteins of taxa available from ENSEMBL Genomes

get_jgi_genomes

A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

hgt_oomycetes

Horizontal gene transfer (HGT) or lateral gene transfer (LGT) involves the transmission of genetic material between distinct evolutionary lineages and can be an important source of biological innovation. For instance, the acquisition of foreign genes can allow recipient organisms to adapt to new lifestyles or to exploit a novel ecological niche, such as a host environment. HGT has long been recognised as an important factor contributing to the evolution of prokaryotic lineages especially in connection to the evolution of pathogencity [1,2]. However, it is becoming increasingly apparent that HGT has also played a role in the evolution of pathogenic traits in eukaryotes [3,4]. Here, we consider how HGT has contributed to genome evolution in the oomycetes.

hugo-academic

The personal website framework for Hugo. Demo at

hyphochytrium

Data files belonging to the Hyphochytrium catenoides Genome Project

hyphochytrium_genomehub

jbrowse

Modern JavaScript-based Genome Browser

jsphylosvg

lddist-1.3.2

LDDist-1.3.2 - Hopefully running on Ubuntu. All credit to original authors.

leca_datasets

marine_fungi

Accompanying files for Identification of 71 marine fungal lineages using diversity tag sequencing 2015, In prep.

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.