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admin_apps

Billing App, Doc App(?) and others(?)

allasia-symbiota

The Symbiota Virtual Flora/Fauna project is an open source software project, with central goal of developing on-line tools that aid in the generation, exploration and management of biodiversity data (collection specimens, observations, images, checklist, keys, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114 and http://symbiota.org/

app-docs

Documentation for apps on the Odyssey cluster

app_andrnaseq

appbetacell_hsinvitro_veresaetal

atac-seq

augustus

Genome annotation with AUGUSTUS

bauer

bioblog

Useful bioinformatics scripts

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-coffee-hour

Short lessons from FAS Informatics coffee hour

biopython

Official git repository for Biopython (converted from CVS)

bird-dfe

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

bulk_rna-seq

Best practices, scripts and workflows for performing bulk RNA-seq expression analyses

catsequences

A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses

cbi_lightsheet_workflow

Workflow for using ImageJ macros for Zeiss LightSheet microscope data processing on HPC

cbs_spm

SPM support scripts for CBS researchers in NCF

cellranger-atac

centrifuge

Classifier for metagenomic sequences

chevrier_lightsheet_processing

ImageJ plug-ins for lightsheet microscope processing for Nicolas Chevrier

cnstoolsearch

cnsutil

CNS utility code

coldfront

HPC Resource Allocation System

comparative-annotation-toolkit

cumilta

A docker file for a combination of polspice, healpix, cfitsio, spherelib

degenotate

dimaapp

Shiny app for Melton lab

dimadb

Proteomics search results database

django

The Web framework for perfectionists with deadlines.