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3dscript

Create 3D/4D animations using a natural language-based syntax

adelaidet

AdelaiDet is an open source toolbox for multiple instance-level detection and recognition tasks.

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

aidamri

Atlas-based processing pipeline for structural and functional MRI mouse data

aind-ccf-registration

aind-smartspim-fuse

SmartSPIM module to generate OMEZarr data from fused images

aind-smartspim-quantification

Takes the output of segmentation and ccf registration to calculate cell counts per brain region

aind-smartspim-stitch

Stitching and fusion pipeline in the cloud

anipose

🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation

annolid

An annotation and instance segmentation-based multiple animal tracking and behavior analysis package.

annolid.github.io

antspy

Advanced Normalization Tools in Python

ask-anything

[VideoChatGPT] ChatGPT with video understanding! And many more supported LMs such as miniGPT4, StableLM, and MOSS.

audio-diffusion-pytorch

Audio generation using diffusion models, in PyTorch.

base_kivy_app

A base for kivy apps with flat layout and providing user configuration

bcfind

Brain cell finder

bg-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

bg-space

Anatomical space conventions made easy.

bindsnet

Simulation of spiking neural networks (SNNs) using PyTorch.

bmtrap_2021

boris

Behavioral Observation Research Interactive Software

bot-sort

BoT-SORT: Robust Associations Multi-Pedestrian Tracking

brainglobe-workflows

Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.

brainj

Fiji pipeline for automated serial section reconstruction and mouse brain analysis.

brainpipe

brainreg

Automated 3D brain registration with support for multiple species and atlases.

brainrender

a python based software for visualization of neuroanatomical and morphological data.

brats18-project

Brain tumor segmentation using fully-convolutional deep neural networks.

cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

ceed

Slice stimulation and recordings