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heche-psb's Projects

agora icon agora

Algorithm For Gene Order Reconstruction in Ancestors

angst icon angst

Analyzer of Gene and Species Trees

fossiler icon fossiler

Python package and CLI for finding available fossils

ksrates icon ksrates

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

subphaser icon subphaser

Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.

wgd icon wgd

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

whale.jl icon whale.jl

Amalgamated likelihood estimation with a DL + WGD model

whaleprep icon whaleprep

Nextflow pipeline for preparatory analyses for Whale

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