Comments (5)
Hello, could you please provide some more details about the code that you are trying to run? Which branch of the repository are you using and what is the code that is not working in VS?
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Hi!
I was trying to run this code with some adjustments: https://github.com/HelmchenLabSoftware/CaImAn_DendriteAnalysis/blob/master/01_Preprocess_MotionCorrect.ipynb
I haven't run all the code, followed step by step and at the cluster setting step I received this error:
_pickle.PicklingError: Can't pickle <function cropTif at 0x0000024A9D6BD5A0>: attribute lookup cropTif on main failed
Exception ignored in: <function Pool.del at 0x0000024A93062E60>
Traceback (most recent call last):
File "C:\Users\melod\anaconda3\envs\caiman\lib\multiprocessing\pool.py", line 271, in del
File "C:\Users\melod\anaconda3\envs\caiman\lib\multiprocessing\queues.py", line 371, in put
AttributeError: 'NoneType' object has no attribute 'dumps'
So the problem is not with the code itself, but with maybe directory or smth else.
from caiman_dendriteanalysis.
Sorry for stupid questions, I'm new in programming and especially in calcium data analysis =/
from caiman_dendriteanalysis.
I think the issue here is that the function cropTif is defined in the Jupyter notebook. If you run in a non-interactive environment, the functions need to be imported explicitly. This is actually how it is done on the caiman_latest branch. Please have a look at utils.py which is then imported in the notebook.
from caiman_dendriteanalysis.
Okay, I will have a look at that code!
from caiman_dendriteanalysis.
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