Comments (2)
So for the late reply. This sounds like an issue with your job scheduler or your batchtools configuration. Also, I know too little about Rocks to know whether batchtools supports it or not. Here is how I would troubleshoot this:
- Start by confirming you can run
batchtools::batchMap()
with your customized Rocks batchtools template file. - Only when (1) works, test with future.batchtools. Just launch a simple future, e.g.
library(future.batchtools); plan(batchtools_custom, ...); f <- future(Sys.info()); v <- value(f)
. That "should work" if (1) works - Retry with higher-level parallelization frameworks, e.g. foreach and doFuture. If (2) works, then those "should work" too.
from future.batchtools.
FYI, I've transferred this issue from doFuture to future.batchtools since it's very unlikely it's related to doFuture. It's more a future backend issue.
Also, I'll go ahead and close this issue since I think it's batchtools related, but feel free to reopen it if you think there's an issue with future.batchtools per se.
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