henrypinkard Goto Github PK

acqengj

Java-based acquisition engine for Micro-manager

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

clean-plots

Nice looking matplotlib plots

dask

Parallel computing with task scheduling

deepautofocus

Single-shot autofocus on microscopes using deep learning

dryad-app

Codebase for the collaboration of Dryad and Dash data publication and curation services.

exengine

(Experimental) Microscopy execution engine

figuremaking

Tutorial of efficient pipeline for making scientific figures

henrypinkard.github.io

imagexd-2019

Website for ImageXD 2019

imswriter

Java library (+ python wrapper) for writing Imaris IMS files

latex-goodies

A collection of LaTeX related stuff that I think is worth sharing

lightsheetmanager

lymphosight

Hardware control, data processing, and machine learning for whole Lymph Node imaging

micro-manager

Microscope control and image acquisition integrated with ImageJ

micro-manager.github.io

Micro-Manager website source

microvision

Assorted image processing functions for microscopy

mmcoreanddevices

Micro-Manager's device control layer, written in C++

mmpycorex

Python package for unified MMCore access through pymmcore or ZMQ-MMCoreJ + associated utilities

nbsphinx

:ledger: Sphinx source parser for Jupyter notebooks

ndstorage

N-dimensional, multiresolution file format for Micro-Manager

ndviewer

N-D multichannel multiresolution image viewer for Micro-Manager

notion-sdk-py

The official Notion API client library, but rewritten in Python! (sync + async)

openmv

OpenMV Camera Module

probability

Probabilistic reasoning and statistical analysis in TensorFlow

pupil_slm_learning

pycro-manager

Python control of micro-manager for customized data acquisition

pycro-plus-bridge

pygellan

[DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan

pyjavaz

Seamlessly invoke Java methods from Python, whether on the same machine or across a network, with PyJavaZ's high-performance remote procedure call (RPC) protocol