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amplicon_bisulfite_seq_pipeline

Pipeline to process amplicon bisulfite sequencing results

amplicon_seq_pipeline

fetalhierachy

WGBS of the fetal hematopoiesis of mice

id3_dnarepair

Project focusing on the role of ID3 in DNA repair.

jmml_coo

Multiomics analysis of a JMML cohort with a focus on DNA methylation, to define the cell of origin for different subgroups.

mouse_mitotic_clock

Transfering the epigenetic mitotic clock from Yang et al. Genome Biology (2016) to mice.

peakseason

An R package for rapid bigWig file summarization and visualization.

pipeline-pinfish-analysis

Pipeline for annotating genomes using long read transcriptomics data with pinfish

repguide-1

repguide_shinyapp

Shiny application to run the R library Repguide from a webserver.

rp-bp

Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.

scnn1b_mouse

Links and code of the "Epigenetic reprogramming of airway macrophages drives polarization and inflammation in muco-obstructive lung disease" manuscript.

scsnakemeth

Single cell whole genome bisulfite sequencing pipeline automated with Snakemake.

tinat

Analysis of TINATs for neoantigen discovery upon epigenetic drug treatment

upsetr_scaleaxis

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..