Helen G Scott's Projects
Workshops for first-year students in the Bioinformatics program at Boston University.
Computation of Microbial Ecosystems in Time and Space
Python interface for running COMETS simulations and analyzing the results
Origin of life project at the Santa Fe Institute Complex Systems Summer School 2023.
Plant Organogenesis/Cell Cycle Project for the Santa Fe Institute Complex Systems Summer School 2023
Build, share, and embed visualizations of metabolic pathways.
README for GitHub profile
Personal Website
Repository to maintain a genome-scale metabolic model of Alteromonas Macleodii HOT1A3
MACAW: a Python package for automatically detecting potential errors in genome-scale metabolic models
memote – the genome-scale metabolic model test suite
An introduction to network analysis and applied graph theory using Python and NetworkX
calculate optimal vcmax in R as in Smith et al. Photosynthetic capacity is optimized to the environment. Ecology Letters.
Materials for the BRITE-REU programming workshops
Files for my Oral Qualifying Exam
rGEDI: An R Package for NASA's Global Ecosystem Dynamics Investigation (GEDI) Data Visualization and Processing.
Command-line utilities and scripts for manipulating SBOL data
SBOL Viz: A web based visualisation tool for Synthetic Biology sequences based on the Synthetic Biology Open Language
Worklflow managers are good mkay
Flow cytometry unit conversion and analytics