Comments (6)
https://bioconductor.org/packages/3.12/bioc/html/densvis.html
(just realised you're not listed as author - I'll fix that soon)
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Great, thanks! I'll keep you posted. Since there's plans to integrate this into the python umap repo, per #2, I'll focus on densne, and later integrate densmap using basilisk
from densvis.
I've got a working version as an R package so will either merge to the Rtsne repo or if they don't want it, a standalone, Quick question - is there a reason that some parameters are hardcoded (eg, here)?
Lines 119 to 120 in 57c3269
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from densvis.
No worries! Great thanks, I just wanted to be sure they weren't tuned for the density preservation.
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Related Issues (11)
- where is requirements.txt HOT 2
- How to find the quantitative evaluation of density preservation? HOT 2
- Can I know the simulation settings? HOT 2
- Support for Numba 0..55.2
- Integration with UMAP repository HOT 2
- Error in py_call_impl(callable, dots$args, dots$keywords) : ValueError: Buffer has wrong number of dimensions (expected 1, got 2) HOT 7
- How can I get the cluster information of cells after densvis processing? HOT 1
- ZeroDivisionError: division by zero HOT 2
- prediction on out of sample HOT 1
- Can densMAP (in development version of Seurat) yield reproducible clustering? HOT 3
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