Comments (4)
curl -u `cat ~/.higlass-server-login` \
-F 'datafile=@/data/downloads/gene-annotations-hg19.db' \
-F 'filetype=beddb' \
-F 'datatype=gene-annotation' \
-F 'uid=OHJakQICQD6gTD7skx4EWA' \
-F 'name=Gene Annotations' \
-F 'coordSystem=hg19' \
localhost:80/api/v1/tilesets/
For comparison, here's tilesets from the google doc. Notice that the examples above are missing credentials, and have a different field for the file. Where does this come from? Are they actually being handled differently?
from higlass-server.
Viewconfs don't require credentials and can't be assigned a uuid (at the moment).
Preventing unauthorized file uploads is more important because those are user-visible (e.g. one can click 'add track' and see the list of tracks that are present). Viewconfs are largely invisible. Unless you know the UUID of a particular viewconf, you won't be aware of its existence.
We can make the viewconfs method accept uids. The function viewconfs
in tilesets/views.py
is responsible for storing saved viewconfs.
To see an example of where we store 'uids', take a look at perform_create
in tilesets/views.py
.
from higlass-server.
I'll take a swing at this. Being able to give the ID when creating a viewconfig would make it a lot easier to describe reproducers.
from higlass-server.
This is implemented and tested: https://github.com/hms-dbmi/higlass-server/blob/7e9519d36b1b91d69c5a5e7755bd43cb28a2762f/tilesets/tests.py#L65-L66
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Related Issues (20)
- link_tile returns a new uuid as a bytestring
- –_project-name_ parameter
- Delete/organize list entries from HiGlass.io HOT 7
- cooler vs clodius HOT 3
- Uids with the '.' character throw off the tiling logic.
- AWS-related tests appear to fail
- Adding track using fileURL to viewConfig gives error HOT 3
- app initialisation failing; cannot connect to upstream HOT 5
- Error with too many open files HOT 6
- Store tileset metadata separately from tileset data HOT 1
- Get tilesetuid given uuid HOT 6
- UI views not updated after tile deletion and reuplaod HOT 3
- import_tileset bigbed seen as bigwig HOT 6
- Screenshot HOT 10
- Update dependency versions
- Deleting Remote BigWig File Results in Error HOT 3
- Django DEFAULT_AUTO_FIELD warnings
- Pillow version 9 error HOT 2
- Installation errors on Red Hat 8 HOT 7
- ingest_tileset probably does not work with ftp HOT 1
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