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convcrf

This repository contains the reference implementation for our proposed Convolutional CRFs.

digits

Deep Learning GPU Training System

factornet

A deep learning package for predicting TF binding

idna6ma

iDNA6mA (5-step rule): Identification of DNA N6-methyladenine Sites in The Rice Genome by Intelligent Computational Model via Chou’s 5-step Rule

ilearn

iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, Feature Normalization, Dimension Reduction and Model Construction for Classification, Best Model Selection, Ensemble Learning and Result Visualization for DNA, RNA and Protein Sequences.

m5c-pred

XGBoost Framework with Feature Selection for the Prediction of RNA N5-methylcytosine sites

prottrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

smmir-cfrautoenc